Following World Cup 1998, Nakisa was transferred to Albanian Side KS Flamurtari Vlorë, but left very soon after to AO Kavalas.

He went back to Persepolis but due to his rivalry with Abedzadeh, Nakisa decided to leave the club for Pas Tehran.

There was speculation linking him to Esteghlal Ahvaz, but after the signing of Ebrahim Mirzapour, Nakisa was no longer needed.

Once again Abedzadeh was injured and Nakisa started in his place for the first game versus Yugoslavia national football team.

Nakisa was extremely nervous, and his mistake allowed Siniša Mihajlović to score on a free kick.