Founded in 1989, Pärnu JK is mostly known for its women's team (Pärnu JK women), who until 2019 competed in the Estonian top division Naiste Meistriliiga.

Domestically, Pärnu won a record 13 Naiste Meistriliiga, 6 Estonian Women's Cup and 7 Estonian Women's Supercup trophies.

The club's men's team last played in the second division Esiliiga.

Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.

Players may hold more than one non-FIFA nationality.