Pawnee Township is a township in Bourbon County, Kansas, United States.

Pawnee Township covers an area of 48.75 square miles (126.3 km2) and contains no incorporated settlements.

According to the USGS, it contains two cemeteries: Hiattville and Saint Mary.

The stream of Little Pawnee Creek runs through this township.

This article about a location in Bourbon County, Kansas is a stub.