After finishing second in the league table, Bayamón captured the playoff championship with a 3–2 aggregate victory over Atléticos de San Juan.
The team was renamed Puerto Rico BFC and was expected to play in the National Premier Soccer League.
In January 2016, it was announced that Bayamón FC would join legendary Spanish striker David Villa on his new project of building soccer academies worldwide.
Delfín Ferreres joined the coaching staff of the Bayamón FC senior team during the PRSL Clausura 2016 Tournament, which they won.
[3] Bayamon snatched up former Quintana Academy captain Luis Bermudes following the teams decision not to participate in the first division in 2017.
[7] Bayamón FC finished runners-up in the Liga Puerto Rico after losing the final in penalty shootout against Metropolitan FA.
[10] In December 2021, Bayamón FC became champions of the 2021 Liga Puerto Rico after defeating Metropolitan FA 1-2 in the final match played at the Mayagüez Athletics Stadium.
[11] In March 2010, Bayamón FC debuted in the Caribbean Football Union's 2010 CFU Club Championship, qualifier for the 2010–11 CONCACAF Champions League.
On 27 March 2010, both teams began the series at Juan Ramón Loubriel Stadium, with Bayamón FC defeating Systems 3 by a score of 4–1.
The final round was played in Trinidad where Bayamón faced the Islanders, San Juan Jabloteh and local champions Joe Public FC.
In the final match, Bayamón got their most memorable win against local champions Joe Public FC with a 3–1 score.
For the 2013 CFU Club Championship, Bayamón FC signed legendary Costa Rican international Walter Centeno.
Bayamón FC were crowned champions of the 2022 edition after defeating Inter Moengotapoe 2-1 in the final celebrated at the Mayagüez Athletics Stadium.
[17] They currently play in the Liga Puerto Rico, opening their inaugural 2018–19 season with a 5–0 win against Guaynabo Gol SC on 21 October 2018.
[21] Fernando Reyes was appointed as Head Coach for the 2019-20 season with striker Karina Socarrás rejoining the team.