He led the Wolverines to four consecutive NCAA tournament appearances (2005–2008) and was the Big Ten Coach of the Year in 2007 and 2008.

The following is a table of Maloney's yearly records as an NCAA Division I head baseball coach.

He had the first overall pick in 2002 Bryan Bullington it was the first time in MAC sports history a player was selected number 1 overall.

Coach Maloney has 14 players between Ball State and Michigan reached the Major Leagues.

• Bryan Bullington • Larry Bigbie • Brad Snyder (baseball) • Jake Fox • Chris Getz • Clayton Richard • Zach Putnam • Ryan LaMarre • Zach Plesac • Drey Jameson • Kyle Nicolas • Alex Call • Chayce McDermott • Sam McConnell Between Michigan and Ball State he coached • 6 Player of the Years • 8 Pitcher of the Years • 7 Freshman Player/Pitcher of the Years • 4 Defensive Player of the Years • 4 Conference Tournament Most Valuable Player Award • 1 Gold Glover (given to best player at that position in the entire country) • 1 National Freshman Pitcher of Year Head coaches that coached under Maloney throughout his career at Michigan and Ball State Division 1 • Jake Boss: Eastern Michigan(2008) Michigan State(2009-Present) • Jeff Mercer: Wright State(2016-2018) Indiana(2019-Present) • Blake Beemer: Butler(2023-Present) • Jason Murray: Charleston Southern(2005-2008) Non- Division 1 • Matt Howard: IU Kokomo(2018-2021) • Ray Skjold: Post University 2019-Present) • Dustin Glant: Anderson University(2016) • Matt Husted: Wheaton College(2013-Present) • Bob Keller: Mississippi Gulf Coast(2022-Present)