The first president was Colonel William Vincent Legge of Tasmania, the secretary was Dudley Le Souef, the treasurer Robert Hall, and the editors Archibald J. Campbell and Henry Kendall.
Many RAOU members in the early 20th century called themselves "oologists", though the distinction between the notionally scientific discipline of oology and simple egg-collecting was blurred.
Modern field guides did not exist and few people could afford the massive multi-volume, lavishly illustrated handbooks of John Gould and Gregory Mathews.
On 12 April 1905, some Melbourne members formed the Bird Observers Club to facilitate more frequent and less formal meetings and field-trips.
In 1909, the union was one of the first major sponsors of the Gould League of Bird Lovers, which was founded by Jessie McMichael and supported by John Albert Leach, the Director of Nature Study in the Victorian Education Department.
During the 1933 campout near Moree, New South Wales, extensive egg-collecting by the oologists present aroused much criticism from other members; the egg-collectors were later formally censured.
This growing split between members' attitudes to bird-study came to a head at the 1935 campout at Marlo, eastern Victoria, when a museum ornithologist, George Mack, provocatively shot a scarlet robin at its nest, which had been under observation by the party.
Membership of the RAOU, after reaching a peak in the 1920s, went into a decline during the Great Depression and the Second World War, and there were difficulties meeting the costs of printing the Emu.
Those who did succeed him during the 1960s struggled to maintain, let alone develop, the journal in a way that the membership and the changing times demanded, and its issue, due to problems with the printers, was becoming erratic.
In a letter sent to the RAOU Council meeting in July 1966, the ACT branch strongly criticised the standard of the Emu, the administrative disorder, and the passivity regarding conservation and field studies.
It finished by proposing two formal motions to (i) adopt active policies for organising research, publicity and education, and to (ii) set up a committee to implement the former.
The next step was when Jack Hyett resigned as editor of Emu in 1968, the ACT Branch nominated Stephen Marchant for the editorship, and he was elected unopposed.
One test of the reformed RAOU was to be the extent of its involvement with the International Ornithological Congress (IOC), held in Canberra in 1974 with about 800 delegates attending.
The secretary-general of the congress (i.e. the principal organiser) was Dr Harold Frith who was not only one of the hardliners of the 'scientists' faction of the pre-reform RAOU, but had also threatened to start a competing group with its own journal if the reforms had not proceeded.
Ultimately the RAOU contributed to the success of the IOC through provision of funding (along with the Australian Academy of Science (AAC) and the administrative assistance of the CSIRO), and with the organisation of excursions for delegates.
The appointment in 1974 of Tommy Garnett as RAOU secretary was also a move that assisted in bringing order to the growing administrative demands of the evolving organisation.
An essential part of the revolution within the RAOU in the late 1960s, and its evolution during the 1970s was a strong push to carry out scientific field studies with the involvement of volunteers.
The first paid staff members of the RAOU were appointed in connection with the project, and the first property, a small house in Dryburgh Street, North Melbourne, acquired as premises for it in 1976.
Also from 2001, the direct management and publication of the Emu was outsourced to CSIRO Publishing, which already handled a large stable of international and Australian scientific journals.
The need to provide adequate working conditions for HANZAB staff was one factor that forced another move of its head office to larger premises in Riversdale Road, Hawthorn in 1994.
In March 2007, the RAOU moved its National Office to new, smaller premises in the Green Building at 60 Leicester Street, Carlton, Melbourne.
The two remaining observatories, both in Western Australia, are: The RAOU has established two reserves, through the purchase of large pastoral leases, in order to protect extensive areas of important bird habitat.
The RAOU has always recognised service to the organisation and to ornithology through the granting of the title of Fellow of the Royal Australasian Ornithologists Union (FRAOU) to a small and limited number of individuals.