After a long period in the lower divisions of Italian football, Milazzo, thanks to three consecutive promotions, has succeeded in joining the professional football by taking part in Lega Pro Seconda Divisione in the 2009–10 season after an ascent started in Promozione Sicily in the 2007–08 season.

Its first season in the Lega Pro Seconda Divisione in 2010–2011 was successful, thanks to a great performance in the second round, which led the team finishing 3rd in the standings.

Milazzo played in the playoffs against Avellino, but lost both matches, thus remained in the Lega Pro Seconda Divisione for next season.

In the second season in Lega Pro Seconda Divisione Milazzo was facing relegation many times, but in the end was saved.

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