When the Pacific War broke, Nishijima was arrested on December 8, 1941, and along with some 1,700 Japanese nationals, was detained by Dutch authorities and interned in Loveday, South Australia.
[6] After the surrender of Japan, Nishijima was sent to locate Sukarno and Mohammad Hatta (who were missing from Jakarta, as they were kidnapped by nationalist youths and held in Rengasdengklok).
[8] He then participated in a meeting at Maeda's house when the Indonesian Proclamation of Independence was drafted, and with his help copies of the text were printed by the Naval Office' press.
[5][10] After a rejection of his visa in 1951 due to "official sensitivity",[11] Nishijima returned to Indonesia in March 1953 in order to meet Sukarno to discuss war reparations.
[5] Nishijima later became a leader and pioneer at the Indonesian Study Group of Waseda University, which published works related to the Japanese military administration of Indonesia.
[18] Australian historian Greg Poulgrain remarked that "whoever in Washington authorized the return of Nishijima and his compatriots [to Indonesia] should also be seen as having contributed to Indonesian independence".
[3] During a 1958 visit by Sukarno to Japan, he gave Nishijima a letter meant to be a tribute to other Japanese agents Ichiki Tatsuo and Tomegorō Yoshizumi, both of whom died during the Indonesian National Revolution.