Wishart's friends included a group of well-connected Protestant Fife Lairds, some of whom had previously conspired with Henry VIII and his ambassador Ralph Sadler either to capture or assassinate Beaton.
William Kirkcaldy of Grange and eight men gained entry to the castle at the drawbridge and when they were joined by John Leslie of Parkhill, they overpowered the porter Ambrose Stirling, stabbed him and threw his body in the ditch.
The genuine masons and the garrison supervised by Kirkcaldy left at the postern gate, where the Cardinal's mistress Marion Ogilvy had recently exited.
Robert Lindsay of Pitscottie wrote that Peter Carmichael stabbed the Cardinal in his chamber, or on the spiral stair, in the east blockhouse tower.
To deter the Cardinal's supporters in the town led by the Provost, James Learmonth of Dairsie, from attempting a rescue, they hung his body in public view from his window or from the parapet at the front of the castle.
John Knox wrote that the defenders covered Beaton's body with salt, wrapped it in lead, and buried it in the Sea Tower of the castle.
[2] David Lyndsay made the Cardinal's ghost voice this detail in his Tragedie of the Cardinall; "Thay saltit me, syne cloist me in a kist.
In September, Henry VIII ordered some supplies to be sent in six ships commanded by William Tyrrell with the military engineer Richard Lee, and that the Lairds should hand over Hamilton to be brought to England (but this was not done).
[7] At first at St Andrews, according to Pitscottie, the garrison harassed the countryside round about the town, raising fires and "using their bodies in lechery with fair women.
"[13] The artillery was directed by Robert Hamilton of Briggis who spent at least £3756 Scots on the wages of workmen called pioneers who handled the heavy guns and made emplacements.
Supplies were obtained from the Laird of Montquhany in Tentsmuir Forest, but Walter Melville and twenty men died because of poor rations and bad fish.
[18] The English Chancellor, Thomas Wriothesley, told Arran's diplomats in London, David Panter and Adam Otterburn, to ask the Regent to desist from the siege.
Arran's negotiators were the Lyon Herald, the Justice Clerk, the Provost of Aberdeen, the Earls of Huntly, Argyll, and Marischal, and Lord Gray, who spoke at the walls of the castle.
As a pledge of good faith the Castilians sent two hostages to Arran in December 1546, two younger sons of the Laird of Grange, and a brother of Lord Ruthven, known as the 'Ald Person.
The force was commanded by his admiral and military engineer, the Italian Leone Strozzi who directed a devastating artillery bombardment to dislodge the Protestant lairds.
Protector Somerset told the Imperial Ambassador, François van der Delft, that the French fleet was going to assault some unimportant fort in Scotland that would be easily recaptured.
According to Pitscottie, the lairds knew an expert was in the field against them when their own Italian engineer observed cannon being winched into position with ropes rather than exposing the besiegers to their fire.
Over the next two days naval bombardment only dislodged some roofing slates, but the castle's guns caused casualties among the galley rowers and the land army.
Knox wrote that "befoir ten houris of the day, the haill sowth quarter, betwix the foir tour and the East blok-house was maid saltable.
The lower transe (passageway) was condempned, diverse slane into it, and the East blok-house was schote off fra the rest of the place, betwix ten houris and ellevin."
Admiral Clinton was to embark on the Pansy at Harwich and make for St Andrews "as fast as wind or weather will serve", and raise the siege or rescue the Protestant lairds and James Hamilton.
[38] According to Jean de Saint Mauris, an Imperial diplomat, the English ambassador, Nicholas Wotton complained to Henry II of France that his action was a violation of the Treaty of Ardres of Camp, because it was well known the castle was held by Scots on behalf of England.
[40] The castle was slighted, and subsequently substantially rebuilt by Archbishop John Hamilton, the illegitimate brother of Regent Arran, and successor to David Beaton.
[41] The sixteenth century Scottish Catholic historian John Lesley described James Hamilton merely as the most important of a number of noblemen's sons in the castle in the Cardinal's service.
[43] Alexander Crichton of Brunstane had previously offered that James Kirkcaldy and Norman Leslie would capture or assassinate the Cardinal for Henry VIII when he and Somerset planned the attack on Edinburgh in 1544.
[46] It is known from Beaton's financial records that he had prepared gabions (baskets filled with gravel for gun emplacements) and bought new cannons in anticipation of an English invasion.
Other commentators, such as Marcus Merriman have seen the failure of the Scottish forces to take the newly equipped castle as indicative of inadequate technology of Arran's army.
Henry Stewart, Lord Methven, the master of the royal artillery, thought the castle could have been won with Arran's own "sobir artalyerij" and pointed out the ease and efficiency of the French captains who "ordourlie persewit" their short assault.