In April 2011, the Government of South Sudan's (GOSS) minister for Youth, Sports and Recreation, Makuac Teny Youk issued a ministerial order establishing the Provisional Football Association.

[4][5] The association was in office for one year and managed, promoted and supervised football affairs in South Sudan.

In April 2012, Chabur Goc Alei replaced Oliver Mori Benjamin as President of the South Sudan Football Association.

[citation needed] In June 2017, Francis Amin was elected as New President of the South Sudan Football Association.

On 22 July 2021 Augustino Maduot Parek was elected President of South Sudan Football Association, replacing Francis Amin for the next four years till 2025.