Football began at the university in the late 1890s and the first official varsity intercollegiate games were played in 1904.

[2] St. Thomas was a charter member of the Minnesota Intercollegiate Athletic Conference, formed in 1920.

[5][6] St. Thomas received approval from the NCAA to begin competing at the NCAA Division I FCS level as a member of the Pioneer Football League starting with the 2021 season and became the first program to jump from NCAA Division III to Division I FCS.

[7] † Co-champions * Ineligible for FCS postseason play due to transition from NCAA Division III The Tommies made nine appearances in the NCAA Division III football playoffs, with a combined record of 20–9.

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