The first album released was The Second Stage Turbine Blade, the second part in the series, followed by the third, In Keeping Secrets of Silent Earth: 3, and the fourth, which is split into two volumes.

The first, Good Apollo, I'm Burning Star IV, Volume One: From Fear Through the Eyes of Madness, was released in 2005, and the second, entitled Good Apollo, I'm Burning Star IV, Volume Two: No World for Tomorrow, was released on October 23, 2007, and is said to be the last chapter in the ongoing saga of Coheed and Cambria Kilgannon, the main characters in The Amory Wars saga.

The band then released a double album entitled The Afterman, set before the events of Year of the Black Rainbow.

After this, the band returned to the Amory Wars storyline with a planned pentalogy of albums, titled Vaxis.

[1] The band's upcoming album, Vaxis – Act III: The Father of Make Believe, will be released on March 14, 2025.