They released Identity Crisis in 2000 and The Illusion of Safety in 2002 through the independent label Sub City Records—an imprint of Hopeless Records.

Shortly thereafter, Thrice signed to the major label Island Records and released their most commercially successful album The Artist in the Ambulance in 2003.

In 2007, Thrice signed to Vagrant Records to release their multi-EP project The Alchemy Index.

I & II in 2007, and the final two EPs were released as The Alchemy Index Vols.

This is not an exhaustive list; songs that were first released on the band's albums, EPs, and singles are not included.