Local traffic included coal and iron ore and steel from the nearby Stanton Ironworks.
With the introduction of Merry-go-round trains direct from colliery to power station, and the decline in the use of domestic coal in favour of North Sea gas, rail traffic through the yards was diminishing quickly.
More recently a number of locos at Toton have been modified for use in France by fellow Deutsche Bahn subsidiary Euro Cargo Rail.
From 2009 both the North Yard and the New Bank sidings became accessible from the south after the whole of the Toton area was re-signalled with a certain amount of remodelling also taking place.
Toton lost the last of its domestic coal traffic in the mid-2000s, when GB Railfreight took over transport originating from Daw Mill Colliery from EWS.
The mothballed yard will be used for storage of assets not currently in use, including locomotives (Class 60s) and wagons.