Werner Baumbach (27 December 1916 – 20 October 1953) was a German bomber pilot during World War II.

He commanded the secret bomber wing Kampfgeschwader 200 (KG 200) of the Luftwaffe, the air force of Nazi Germany.

He was one of the first pilots to fly the Junkers Ju 88 bomber and flew various bombing missions with Kampfgeschwader 30 (KG 30).

On 19 April 1940, he bombed and damaged the French cruiser Émile Bertin for which he was awarded the Iron Cross 1st Class.

He died in a plane crash on 20 October 1953 near Berazategui, while evaluating a British Lancaster bomber for the Argentine Air Force.