[1] In addition to his role as auxiliary bishop, Malooly was later named western vicar of the archdiocese, serving the thirty-eight parishes and six missions in Allegany, Carroll, Frederick, Garrett, Howard, and Washington counties in Maryland.
In 2006, Malooly received the Cardinal Shehan Award from the Archdiocesan Youth Office and an honorary doctorate in humane letters from Mount Saint Mary's University.
Malooly was criticized by some Catholic news outlets for refusing to withhold communion from then U.S. Vice President Joseph Biden due to his position on abortion rights for women.
[3] On September 25, 2008, Malooly made this comment on the issue:...I do not intend to get drawn into partisan politics nor do I intend to politicize the Eucharist as a way of communicating Catholic Church teaching, It is critical to keep the lines of communication open if the church is going to make her teachings understood and, please God, accepted.
[3]On November 9, 2011, Malooly co-authored a statement opposing legislation in the Delaware General Assembly to legalized same sex marriage, calling it a threat to religious freedom.
[4] In 2017, Netflix released the documentary series The Keepers, an investigation into the 1969 murder of Sister Catherine Cesnik in Baltimore.