Despite the name, the station is located south of the city of Yavne, near the entrance via Highway 42, and adjacent to an industrial area.

Five local and intercity bus lines serve the station and the parking lot has 300 spaces.

The former station was located near the village of Al-Qubayba, presently within the moshav Ge'alya east of Yavne.

As part of the double-tracking, upgrade and electrification works of the Rehovot–Pleshet section of the Lod–Ashkelon railway and a large housing and commercial development plan for the area, Yavne East station will be rebuilt in a different location on the railway sometime by the mid-2020s decade.

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