They all played two games, once at home and once on the road, against each other in their zone to decide the top two who would join with bottom two from Premier Division first phase to create a Premier Division promotion tournament.
Winners of both groups secured a place in 1995–96 Esiliiga season.
FC Arsenal Tallinn was the only team to rise up from the Second Division to play in Esiliiga the next year for the first time.
JK Dünamo Tallinn, Tallinna Jalgpallikool and FC Lelle returned to the division, as they all failed to qualify to Meistriliiga.
JK Tervis Pärnu was the only successful team to be promoted.