The 2003 UEFA Intertoto Cup finals were won by Schalke 04, Villarreal, and Perugia.

This game was declared void by UEFA due to fan incident at the stadium with smoke bomb thrown onto the field.

The second leg game by itself determined the result of the matchup.

2–2 on aggregate, Pasching won on away goals rule.

3–3 on aggregate, Partizani won on away goals rule.

3–3 on aggregate, Brno won on away goals rule.

3–3 on aggregate, Győr won on away goals rule.

2–2 on aggregate, Tampere United won on away goals rule.

2–2 on aggregate, Sloboda Tuzla won on penalties.

4–4 on aggregate, Nice won on away goals rule.

2–2 on aggregate, Racing de Santander won on away goals rule.

3–3 on aggregate, Koper won on away goals rule.