The 2006 NCAA Bowling Championship was the third annual tournament to determine the national champion of women's NCAA collegiate ten-pin bowling.

The tournament was played in Houston, Texas during April 2006.

[1] Fairleigh Dickinson defeated Alabama A&M in the championship match, 4 games to 1, to win their first national title.

The tournament's Most outstanding bowler was Lisa Friscioni from Fairleigh Dickinson.

A total of 8 teams were invited to contest this championship, which consisted of a double-elimination style tournament.