Opening round games were played at home team campus sites, while the semifinals and championship games were played at the Blue Cross Arena in Rochester, New York.
Both Air Force and Rochester joined Atlantic Hockey for the 2006-07 season; however, due to their reclassification from Division III to Division I status, RIT was ineligible for the 2007 conference tournament.
This would be changed the following year when RIT would compete as a full D-I program.
The play-in game consists of the eighth and ninth seeds competing to decide the final qualifier.
Note: GP = Games played; W = Wins; L = Losses; T = Ties; PTS = Points; GF = Goals For; GA = Goals Against Teams are reseeded after the Quarterfinals Note: * denotes overtime period(s)