On 31 May 2009, with Nikos Georgantzoglou as president, AEK won the first Greek handball cup winning Filippos by a score of 33–31 in Serres.

In addition, AEK HC participated in the final four of Greek men's handball cup on 29 May 2010 in Lamia, but the semi-final game against PAOK did not take place due to fan "fights".

AEK participated to the EHF Cup for the period 2012–13 but was eliminated by Diomidis Argous in the first round, losing both games at Argos and Athens.

On 3 March 2013, AEK won the second Greek handball cup in its history, winning PAOK by a score of 27–23 in Kerkyra (Corfu).

[6] On 29 March 2015, AEK participated in the final of the Greek men's handball cup for the fifth time in a row, against PAOK, but lost the game by a score of 27–29.

[citation needed] On 14 and 20 May 2018, AEK HC played the final games of EHF Challenge Cup 2017–18 and became one of the three most successful teams in Greek handball (including Diomidis Argous and Filippos Verias) in European achievements.

[8] On 23 May 2021, AEK HC won the fourth Greek handball cup in its history, winning PAOK by a score of 24–22 in Kozani.