In the 1999 Copa Perú, the club qualified to the National Stage, but was eliminated by Universidad Privada Antenor Orrego of Trujillo in the finals.

In the 2001 Copa Perú, the club qualified to the National Stage, but was eliminated by Deportivo Bolito of Tacna in the quarterfinals.

The club have played at the Peruvian Segunda División on two occasions, from 2006 until 2007 when it was relegated.

In the 2012 Copa Perú, Alfonso Ugarte lost the final against UTC from Cajamarca and qualified to the Segunda Division Peruana once again.

Alfonso Ugarte has had a long-standing rivalry with Diablos Rojos and Unión Carolina.