Aquatic Microbial Ecology is a monthly peer-reviewed scientific journal covering all aspects of aquatic microbial dynamics, in particular viruses, prokaryotes, and eukaryotes in marine, limnetic, and brackish habitats.

[1] The journal was originally established as Marine Microbial Food Webs by P. Bougis and F. Rassoulzadegan in 1985, and acquired its current name in 1995.

[2] The journal is currently published by Inter Research.

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