It was officially merged into the command structure of the Army of the Danube on 29 April 1799, although it continued to operate in the Swiss theater until 1801.
The Army's initial campaigning in the old Swiss Confederation resulted in severe setbacks and defeats at Feldkirch, Lusiensteig, and Zurich.
From October 1797 until 1–2 March 1798, when the French crossed the Rhine into Germany, the signatories of the Treaty of Campo Formio had avoided armed conflict.
Several diplomatic incidents undermined this agreement: the reluctance of the Austrians to cede the designated territories; the ineptitude of Second Congress of Rastatt to orchestrate the transfer of additional territories that would compensate the German princes for their losses; the refusal of Ferdinand of Naples to pay tribute, followed by the Neapolitan rebellion; and the subsequent establishment of the Parthenopaean Republic.
The new regime abolished both cantonal sovereignty, or the practice of particular local governance, and feudal rights, and established a centralized state based on the ideas of the French Revolution.