Since Nitzer Ebb's 1995 release, Harris has become an in-demand collaborator working with Depeche Mode, The Smashing Pumpkins,[4] Evanescence, AFI, Avril Lavigne, Bush, and Billy Corgan, who asked Bon to co-produce his solo album, TheFutureEmbrace.

[5][6] Manson appears as a guest on Maven's cover of Nick Cave's "Hard On For Love" and had this to say of his collaborator and some-time inspiration: "Bon was someone I had always respected and even interviewed in 1989 and was completely blown away by his musical ability and voice.

He worked on Bravo's popular shows Project Runway and Top Chef, as well as NBC's Treasure Hunters.

Nitzer Ebb embarked on a worldwide tour in 2006 that continued until 2008 when Harris returned to the studio to work on the album Industrial Complex which was released in 2009.

[7] During the COVID-19 pandemic, Harris and Douglas McCarthy got together to work on a side project called D-R-A-G.[7] In November 2021, Harris performed on lead vocals for a Nitzer Ebb show in Palm Beach, Florida and Toronto, Ontario due to bandmate McCarthy falling ill and going to the hospital.