The Burlington Junction Railway (reporting mark BJRY) is a Class III short line railroad which was chartered in 1985.

[1] Originally operating on the southernmost 3 miles (4.8 km) of the former Burlington, Cedar Rapids and Northern Railway mainline in Burlington, Iowa, after abandonment by the Chicago, Rock Island and Pacific Railroad, it provides short freight hauling, switching operations, locomotive repair, and transloading services, the latter currently handling over 3,000 carloads a year.

Typical commodity types transported include chemicals and fertilizer.

The BJRY's primary interchange partner is the BNSF Railway.

Other Burlington Junction Railway assets include 50,000 feet (15,000 m) of warehouse space, as well as various types of bulk material handling equipment such as augers.