[5] Joerger remained with the Wizards as IBA, IBL, and CBA teams merged to create the new Continental Basketball Association after the league declared bankruptcy under the ownership of Isiah Thomas.
[6] Joerger continued to have success with the Wizards in the CBA, reaching the conference finals with a league-leading 31–17 regular season record in 2002–03 before losing to the Yakima Sun Kings 3–1.
[7] Throughout the 2003–04 season, Joerger lost six players to NBA call-ups, which included Sean Lampley, Oliver Miller, Kaniel Dickens, Maurice Carter, Eddie Gill, and Rodney Buford.
[9] With Dickens and Carter back from the NBA, the Wizards defeated the Rockford Lightning 3–1 in the semi-finals and won their second CBA championship with a 132–129 victory over the Idaho Stampede.
[10] Following another championship season and a stint with the USBL's Cedar Rapids River Raiders,[11] Joerger left the Wizards for an opportunity to coach the Sioux Falls Skyforce.
With the Skyforce, a franchise that had missed the play-offs the past few seasons, Joerger had immediate success, guiding them to a 31–17 record and faced off against his former assistant, Casey Owens, and the Dakota Wizards in the conference finals.
After a first round bye, Joerger's team knocked off the Skyforce 115–113 in a one-and-done semi-final and went on to defeat the Colorado 14ers 129–121 in a classic overtime championship game.
[15] On June 10, 2013, the Grizzlies organization announced that Lionel Hollins would not be returning as the team's head coach, despite reaching the conference finals for the first time in franchise history.