It plays in the Russian Amateur Football League, Zone Far East.

Founded in 2000, FK Birobidzhan was built on the basis of local talent.

They won multiple championships of the Far East Group but several years later the results began to stagnate.

[2] Birobidzhan began their most promising season in 2012 aiming to reach promotion to professionalism.

It began with a 4–0 heavy defeat to FC Belogorsk, soon followed by enduring an 8-match losing streak before winning one game opposing the development squad of FC Yakutiya Yakutsk.