It competed professionally in the Russian Second Division (East Zone) for a single season in 2008, taking 4th place.

It previously played in the Amateur Football League.

It is a farm club of FC Sibir Novosibirsk.

[1] Before the 2018–19 season, it was revived once again and reentered the third-tier Russian Professional Football League.

At the end of the 2018–19 season, the parent club Sibir was relegated to PFL itself, therefore Sibir-2 was not eligible to participate in the 2019–20 season of the competition.