Encouraged by his father to take on football, Choudhary started his career as a centre back with the Maharashtra state youth teams.

[2] He then joined Lonestar Kashmir for their I-League 2nd Division campaign in which he scored six goals in 18 matches.

[2] After his impressive performance for Lonestar Kashmir, Choudhary signed for Kerala Blasters of the Indian Super League.

[4] He made his debut for the club on 8 January 2017 in their opening match of the season against DSK Shivajians.

[5] On 23 July 2017, Choudhary was selected in the 11th round of the 2017–18 ISL Players Draft by Jamshedpur for the 2017–18 Indian Super League season.