However, the emergence of Lincoln Red Imps saw Glacis's dominance decline, and their 17th and final title to date came in the 1999–2000 season.

The recruitment of Manuel Jimenez Perez in 2016, however, saw a more successful season with the club finishing 4th in the 2016–17 season, challenging St Joseph's for 3rd place and UEFA Europa League qualification.

Manager Manuel Jimenez Perez left at the end of the season, and was replaced by Mariano Marcos Garcia on 9 July 2017.

Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.

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