The club debuted in the first ever Maltese Women's League organised by the Malta Football Association in the 1995–6 season,[1] which was played on a seven-a-side basis.

[1] Gozo Girls' first season was a rather successful one, especially for Rita Azzopardi, who ended up the team's top-scorer with 15 goals.

[1] Gozo Women competed in the subsequent season as well, this time under the stewardship of Victor Camilleri.

The 1995–6 season was held on a nine-a-side basis[2] and Rachel Saliba led the scoring charts for Gozo with 15 goals.

[2] After its re-organisation in 2007, Gozo Women primarily played its home matches at the Sannat Ground.