The club regularly participates in the PFF National Challenge Cup.
Gwadar Port Authority debuted in the 2011–12 PFF League, where they finished last in their group.
They defeated Pakistan Police in their second match of the final stage.
Gwadar Port Authority ended up in the third place on the group points table and gained promotion to the eventually cancelled 2021–22 Pakistan Premier League.
[1] Following the domestic football revamp in the country in 2023, departmental clubs including Gwadar Port Authority remained competing in the PFF National Challenge Cup.