[2][3] On 30 July 2014, Zeqiri joined fellow Albanian Superliga side Kukësi by penning a one-year contract worth €80,000.
[5] On 1 February 2017, Zeqiri played 84 minutes in the returning leg of Albanian Cup quarter-final against Besëlidhja Lezhë, which ended in a 1–2 home shock loss, which brought the elimination from the competition.
[6] After the match, while at dressing room, he had a clash with club administrator Sinan Idrizi, which resulted him being suspended.
[11] Three days later, he transfer was made official and the player signed a two-year contract with the club, and was handed squad number 7.
[16] After two months unemployed, Zeqiri agreed personal terms and joined Kamza on a six-month contract,[17] only to force a departure from the club 3 weeks later.