In the theory of many-particle systems, Jacobi coordinates often are used to simplify the mathematical formulation.
These coordinates are particularly common in treating polyatomic molecules and chemical reactions,[3] and in celestial mechanics.
[4] An algorithm for generating the Jacobi coordinates for N bodies may be based upon binary trees.
The position coordinates xj and xk are replaced by their relative position rjk = xj − xk and by the vector to their center of mass Rjk = (mj qj + mkqk)/(mj + mk).
The order of children indicates the relative coordinate points from xk to xj.
If one is interested in evaluating a free energy operator in these coordinates, one obtains In the calculations can be useful the following identity