[2] In summer, it inhabits remote alpine scrub on scattered rock outcrops and in upper fringes of closed coniferous forests at an elevation of 3,000–3,500 m (9,800–11,500 ft) using invariably use steep slopes (≥ 20°).

It is endangered due to habitat loss and also because of poachers hunting the animal for its prized scent glands.

In June 2009, three individuals were detected in the Nuristan Province, showing that it still persists in the country despite unregulated hunting, extensive deforestation, habitat degradation, and the absence of the rule of law.

Suitable habitat for the Kashmir musk deer in Afghanistan of about 1,300 km2 (500 sq mi) in the contiguous Nuristan, Kunar and Laghman Provinces is highly fragmented.

[4] Other than poaching, human activity also impacts the Kashmir musk deer population because livestock grazing, urban expansion, and the collection of wood damage the montane habitat.