In 1954, New York Central closed the ticket agency in the Katonah station, and the building was later sold to private owners.

A small waiting room was maintained for passengers through 1984, when Metro-North opened its new station immediately north of Jay Street crossing.

A bridge over the Muscoot Reservoir for Lakeside Road north of the Lakeside Road parking lot was converted into a connecting ramp from Interstate 684 at the southbound on-ramp of exit 6, but was later closed.

[5] The station has one eight-car-long high-level island platform serving trains in both directions.

Similar to both Brewster and Croton Falls, it is right in the village's downtown business district.