They lost to the Sacramento Knights 2–0 in the NPSL championship game on July 29, 2006, with Anthony Chimienti and Alfredo Renteria scoring in the final 19 minutes.

Goalkeeper Eric Mickschl was named the NPSL Midwest MVP, while teammate Jed Hohlbein also made the All-Midwest team for the second time.

Midfielder Brad Ring was named the NPSL Midwest MVP, and was joined on the All-Midwest team by goalkeeper Ryan Germann, defender Reed Cooper, defender-midfielder Tenzin Rampa and forward Jed Hohlbein.

Jed Hohlbein, Brad Ring, Reed Cooper and midfielder Trevor Banks were named to the All-Midwest team.

The 56ers made their debut in the USASA Region II Amateur Cup, losing to Croatia Cleveland 3–0, then defeating FC Indiana 3–1 and Illinois' AAC Eagles 5–3 at the competition in Oak Forest, Ill., but failing to advance to the final.

The 56ers finished 0–1–1 at the USASA Region II Amateur Cup, tying Detroit United 1–1 and losing to Illinois' Inferno SC 3–0; their scheduled finale against St. Louis Kutis SC was canceled due to field conditions with both teams out of contention for advancement.

Andre Francois also had a hat trick in a 9–1 home win over the Madison Latino League All-Stars in a friendly on July 2, 2006.

Henry Aiyenero had the fourth three-goal game in team history on July 12, 2008, in a 7–0 win over the Milwaukee Bavarians and Betinho posted the fifth on June 28, 2010, in a 9–1 victory over Eau Claire Aris FC.

Defender Aaron Hohlbein, like his older brother a former standout at Middleton High School and the University of Wisconsin–Madison, was selected by the Kansas City Wizards with the third pick of the 2007 MLS Supplemental Draft.

Brad Ring, a midfielder for the team in 2007 and 2008, was selected by the San Jose Earthquakes with the 17th pick of the 2009 MLS SuperDraft.

Jed Hohlbein played with VfR Süsterfeld Kassel in Germany in 2009, helping the team earn promotion from the Seventh Division in the process.

Midfielder Andy Adlard was selected by the Columbus Crew in the third round of the 2011 MLS Supplemental Draft and signed with the club on February 21, 2011.

Source: [1] Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.