After making it through the Straits of Magellan, they became separated, but later rejoined the Hoop (Hope) off the coast of Chile, where some of the crew and captains of both vessels lost their lives in an encounter with natives.
With a decimated and sick crew (only 24 were still alive, and several were dying) the damaged De Liefde made landfall off Bungo (present-day Usuki) on the coast of Kyūshū in April 1600.
[1][2][3] The nineteen bronze cannons were unloaded from the ship and, according to Spanish accounts, later used at the decisive Battle of Sekigahara on 21 October 1600 (between Tokogawa forces and their rivals).
[4] Van Santvoort was allowed to leave Japan with De Liefde's Captain Jacob Quaeckernaeck in 1604 on a Red Seal Ship, provided by the daimyō of Hirado, for Pattani in the Malay Peninsula.
He assisted the Dutch East India Company (Vereenigde Oostindische Compagnie, VOC) envoys, Abraham van den Brock and Nicolas Puyck during their diplomatic mission to visit the Shōgun in Sumpu and in Edo.
Van Santvoort together with another former crewmember of De Liefde, Jan Joosten (also a hatamoto), reportedly made a fortune in trade between Japan and Southeast Asia.