[1] During the reign of Khudayar Khan, the Khanate was suffering from a civil war and from interventions of the Emir of Bukhara.

[4] In the 1840s, Khudayar Khan was essentially locked in the palace in Kokand, whereas the Kipchak nomad elite under Musulmonqul had all the power in the Khanate.

[4] He put the northern parts of the Khanate under special government, and appointed Mirza Akhmad to be the governor.

He launched an attack on the Khudayar's forces, and at the same time Muzaffar had to return to Bukhara to suppress a rebellion which started in Shahrisabz.

Alimqul managed to agree with the Emir, launched simultaneous attacks on Kokand and Tashkent, and finally took them under control.

In Kokand, Kipchaks declared Hudaykul Bey the khan, however, after a fortnight he flew to Kashgar.

[2] In 1866, Russians proceeded to the south, occupying Khujand, and thus physically separating the Kokand Khanate and the Bukhara Emirate.

[1] The reign of Khudayar Khan in the 1860s was notable for extremely high taxes and dysfunctional legal system, which was even worse than what his predecessors installed.

[5] Under the orders of Khudayar Khan, his military officer Niaz-Muhammad ibn Ashur-Muhammad Khoqani wrote the Tarikh-i Shahrukhi, a Persian chronicle about the Khanate of Kokand.