Murtagh Roe O'Neill (Irish: Muircheartach Ruadh Ó Néill) was a lord of Clandeboye in medieval Ireland.
He succeeded his father Brian Ballagh O'Neill who died in 1425 to the lordship of Clandeboye.
Before O'Neill could take control he and his second-in-command, his younger brother Hugh Boy, had to remove their uncle Henry Caoch O'Neill who strongly challenged their claim.
Hugh Boy however would die on 2 May 1444 from wounds received in a raid on the Magennis' of Iveagh.
O'Neill would regain the lordship and hold it until 1468 when Hugh Boy's son Conn seized it from him after engaging in battle.