He signed his first professional contract with Thai Premier League side Tobacco Monopoly (now TTM Chiangmai) in 2001.

The left back at the moment spent 4 years with the club and won 1 Thai Premier League title in 2004–2005.

In 2007, Nattaporn joined a newly Thai Premier League champions Chonburi.

In 2009, the Thai defender switched to a Nonthaburi based club Muangthong United.

He was a first team regular in the reign of Peter Reid and Bryan Robson but later dropped to a substitution in recent months of German Winfried Schäfer's management.