Following the successful invasion of Madagascar, the squadron moved to Kenya, where it was equipped with the Bristol Blenheim V for use in the maritime patrol role, thus returning to its original purpose.

16th SAAF Squadron, stationed in then Italy, made dozens of air strikes against German forces and collaborators in then Croatia, Serbia, Slovenia, Bosnia and Herzegovina, etc.

The latest chapter in 16 Squadron's history began on 28 October 1999 when it was reformed at AFB Bloemspruit and equipped with the new Denel Rooivalk attack helicopter, receiving all 12 ordered.

Due to the complexities of integrating a new type and the creation and modification of tactics for the use of the SAAF's first attack helicopter, the squadron was only expected to reach complete operational readiness in 2008.

It is however still a functioning squadron, and regularly carries out joint exercises with the South African Army and other elements of the Air Force.