The Pepperdine Waves baseball team represents Pepperdine University in the sport of baseball.

The Pepperdine Waves compete in Division I of the National Collegiate Athletics Association (NCAA) and in the West Coast Conference.

They are currently led by head coach Tyler LaTorre.

[2] The Waves have been to the College World Series twice, winning the national championship in 1992 under head coach Andy Lopez with a win over Cal State Fullerton.

34 former Pepperdine players have played Major League Baseball.