[4] In early 2019, charter-holder Santa Ana Unified School District (SAUSD) threatened not to renew the Orange County School of the Arts' (OCSA) charter over a claim of an alleged misallocation of $19,000,000 in Special Education funding as well as an additional claim that OCSA's existing admissions practices were discriminatory and resulted in a student body did not represent demographics of Santa Ana's largely Hispanic neighborhoods.

Santa Ana Unified should be working harder to provide more arts-rich experiences for kids, so they discover and follow that pathway"In early 2020, OCSA brought their case to the Orange County Board of Education (OCBE), and asked for the OCBE to renew their charter instead, and on March 4, 2020, The Orange County Board of Education voted to renew the school's five year charter, resulting in the forfeiture of SAUSD's governing rights over OCSA as a school in their district.

As of the 2020-2021 school year, OCSA has instituted new admissions requirements involving "auditions" being replaced with "placement activities" to determine if potential students are a fit for the conservatories they have applied to.

[5][6][7] On September 11, 2023, The Louis D. Brandeis Center For Human Rights Under the Law, Anti-Defamation League, American Jewish League, Potomac Law Group, and Stand With Us filed a lawsuit, on behalf of students, against SAUSD that “alleged violations of California’s open meetings law, including failing to provide proper public notice before approving multiple ethnic studies courses containing anti-Jewish bias and for refusing to protect the public, including members of the Jewish community, from intimidation and harassment at Board meetings.” Plaintiffs allege SAUSD violated the Brown Act, which prohibits secret legislation by public bodies and requires open meetings.

[8] In July 2024, Aaron Raya, a track and football coach and substitute teacher at SAUSD's Godinez Fundamental High School, was arrested after it was revealed he sent "inappropriate texts" which encouraged an underage female student to meet him for sex.