Founded in 2010, it primarily serves the northern Luzon provinces of Batanes, Cagayan and Isabela as well as the city of Baguio from its hub at Binalonan Airport.

SkyPasada started in 2005 as the WCC Pilot Academy (now WCC Aeronautical and Technical College), an aviation school established by World Citi Colleges, which was an educational institution in Cubao, Quezon City founded by the Guico family of Binalonan, Pangasinan.

[2][3] On 19 February 2010, the Guico family founded SkyPasada and began offering charter flights to various destinations in northern Luzon after it signed a memorandum of understanding with the local governments of Batanes, Cagayan and Isabela to launch the Northern Luzon Aeronautical Highway.

[4] The aeronautical highway is a project of Philippine President Gloria Macapagal Arroyo, who is a cousin of the company's founder.

[7][8] On 1 July 2010, the airline temporarily suspended operations after the Civil Aviation Authority of the Philippines ordered the company to repair its fleet of two Let L-410 Turbolet aircraft to conform to international standards.