Allen played for the school's varsity baseball team for three years.

He was named a First Team All-Conference selection as a sophomore while playing the outfield.

As a redshirt freshman in 1998, Allen was named a 2nd Team All-Northwest Athletic Association of Community Colleges.

[3] In the 2000 season as a junior, Allen had a .258 batting average, a .333 on-base percentage (OBP), and a .315 SLG, with ten RBIs.

Allen had his best season as a senior in 2001, hitting career highs in doubles (10), home runs (1), RBIs (17), batting average (.267) and slugging (.360).