Thomas Lye, or Lee, or Leigh, (25 March 1621 – 7 June 1684) was an English Nonconformist minister.
He matriculated at Wadham College, Oxford, as Leigh, on 4 November 1636, was elected scholar on 6 Oct. 1637, and proceeded B.A.
After the Stuart Restoration, in November 1660, he, with other ministers in London, made an ‘acknowledgment’ to the king ‘for his Gracious Concessions... concerning Ecclesiastical affairs,’ but he was ejected from All Hallows in August 1662 by the Act of Uniformity.
He seems to have collected a congregation at Dyers' Hall, Thames Street, soon afterwards, and to have preached in the independent meeting-house at Clapham.
In his will he left property to his two daughters, Sarah and Mary, all that survived of a large family.
On the title-page to the ‘Farewell Sermons of the Ejected Ministers,’ London, 1662, is a small portrait of Lye, with thirteen others.