The team's origins date back to 1994, when Colombian coach Jorge Eliécer Paredes brought together a group of boys in the neighborhood of Villa Universitaria, Humacao to practice the sport every Saturday.

In 1996 Mexican coach Evaristo Pérez joined the team, along came the academy's first student, Jonathan Genero Grilli, a 10-year-old Argentinian boy.

In 1999, thanks to a group of concerned parents and Rosa de Trujillo the wife of the then mayor of Humacao, that wanted to consolidate the youth system, the team in all its levels has played in the Jacinto Hernández Park since 2001.

2008 Season On 30 June 2008, the team announced their official roster[1] and on 5 July 2008 played their first professional game against Academia Quintana, which they lost 5–0.

In the first two games of this stage, Tornados de Humacao lost to Guaynabo Fluminense FC and Academia Quintana.